There are some notable compacts such as the Great Lakes compact, Atlantic Fisheries compact, etc… that seem to require a large amount of authority to enforce in practice.
Theoretically it makes sense for such compacts to be reliant on the sovereignty of the states themselves, which would suggest that they can only be altered based on mutual consent of the State parties.
Though on the other hand, why would the federal government allow such an organization that can’t be modified or eliminated in the future at the federal level (without a court order), to be established in the first place under their aegis? (As all compacts have to be authorized by Congress before coming into effect)